Papers
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Altered development and lignin deposition in rice p-COUMAROYL ESTER 3-HYDROXYLASE loss-of-function mutants, The Plant Journal, 2025
Yuri Takeda-Kimura, Tetsuya Mori, Shiro Suzuki, Masahiro Sakamoto, Kazuki Saito, Ryo Nakabayashi, Yuki Tobimatsu, Toshiaki Umezawa
Multiple Authorship (Only Japanese)
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Genomes of Poaceae sisters reveal key metabolic innovations preceding the emergence of grasses, BioRxiv, 2024.11
Yuri Takeda-Kimura, Bethany Moore, Samuel Holden, Sontosh K. Deb, Matt Barrett, David Lorence, Marcos V. V. de Oliveira, Jane Grimwood, Melissa Williams, Lori Beth Boston, Jerry W Jenkins, Christopher...
Multiple Authorship (Including Foreigners)
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Striga hermonthica induces lignin deposition at the root tip to facilitate prehaustorium formation and obligate parasitism., Plant communications, 101294, 2025.03
Cui S, Takeda-Kimura Y, Wakatake T, Luo J, Tobimatsu Y, Yoshida S
Multiple Authorship (Only Japanese)
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Disruption of aldehyde dehydrogenase decreases cell wall-bound p-hydroxycinnamates and improves cell wall digestibility in rice., The Plant journal : for cell and molecular biology, 120(6) 2828-2845, 2024.12
Yamamoto S, Afifi OA, Lam LPY, Takeda-Kimura Y, Osakabe Y, Osakabe K, Bartley LE, Umezawa T, Tobimatsu Y
Multiple Authorship (Only Japanese)
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Synthesis and physiological function of lignin in the reproductive structures of angiosperms, Phytochemistry Reviews, 2024.11
Monica Borghi, Yuri Takeda-Kimura
Multiple Authorship (Including Foreigners)
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Essential residues in diterpene synthases for biosynthesis of oryzalexins A-F in rice phytoalexin., The FEBS journal, 291(16) 3653-3664, 2024.08
Miwa T, Ishikawa O, Takeda-Kimura Y, Toyomasu T
Multiple Authorship (Only Japanese)
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Gibberellin-biosynthetic ent-kaurene synthases in higher plants do not require their non-catalytic domains for the catalysis., The Biochemical journal, 481(12) 779-791, 2024.06
Oshikawa S, Naoe A, Moriya T, Hasegawa Y, Nakasato M, Ogawa Y, Wakabayashi H, Itoh A, Takeda-Kimura Y, Miyazaki S, Kawaide H, Toyomasu T
Multiple Authorship (Only Japanese)
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Coordinated regulation of the entry and exit steps of aromatic amino acid biosynthesis supports the dual lignin pathway in grasses., Nature communications, 14(1) 7242, 2023.11
El-Azaz J, Moore B, Takeda-Kimura Y, Yokoyama R, Wijesingha Ahchige M, Chen X, Schneider M, Maeda HA
Multiple Authorship (Including Foreigners)
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Disruption of <i>p</i>-Coumaroyl-CoA:monolignol transferases in rice drastically alters lignin composition, Plant Physiology, 2023.10
Lydia Pui Ying Lam, Yuki Tobimatsu, Shiro Suzuki, Takuto Tanaka, Senri Yamamoto, Yuri Takeda-Kimura, Yuriko Osakabe, Keishi Osakabe, John Ralph, Laura E Bartley, Toshiaki Umezawa
Multiple Authorship (Including Foreigners)
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Lignocellulose molecular assembly and deconstruction properties of lignin-altered rice mutants, Plant Physiology, 2023.01
Andri Fadillah Martin, Yuki Tobimatsu, Pui Ying Lam, Naoyuki Matsumoto, Takuto Tanaka, Shiro Suzuki, Ryosuke Kusumi, Takuji Miyamoto, Yuri Takeda-Kimura, Masaomi Yamamura, Taichi Koshiba, Keishi Osaka...
Multiple Authorship (Including Foreigners)
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Point mutations that boost aromatic amino acid production and CO 2 assimilation in plants, Science Advances, 2022.06
Ryo Yokoyama, Marcos V. V. de Oliveira, Yuri Takeda-Kimura, Hirofumi Ishihara, Saleh Alseekh, Stéphanie Arrivault, Vandna Kukshal, Joseph M. Jez, Mark Stitt, Alisdair R. Fernie, Hiroshi A. Maeda
Multiple Authorship (Including Foreigners)
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Deficiency in flavonoid biosynthesis genes <i>CHS</i>, <i>CHI</i>, and <i>CHIL</i> alters rice flavonoid and lignin profiles, Plant Physiology, 188(4) 1993-2011, 2022.03
Pui Ying Lam, Lanxiang Wang, Andy C W Lui, Hongjia Liu, Yuri Takeda-Kimura, Mo-Xian Chen, Fu-Yuan Zhu, Jianhua Zhang, Toshiaki Umezawa, Yuki Tobimatsu, Clive Lo
Multiple Authorship (Including Foreigners)
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Comparative evaluations of lignocellulose reactivity and usability in transgenic rice plants with altered lignin composition, Journal of Wood Science, 65(1) , 2019.12
Yuri Takeda, Yuki Tobimatsu, Masaomi Yamamura, Toshiyuki Takano, Masahiro Sakamoto, Toshiaki Umezawa
Multiple Authorship (Including Foreigners)
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OsCAldOMT1 is a bifunctional O-methyltransferase involved in the biosynthesis of tricin-lignins in rice cell walls, Scientific Reports, 2019.08
Pui Ying Lam, Yuki Tobimatsu, Naoyuki Matsumoto, Shiro Suzuki, Wu Lan, Yuri Takeda, Masaomi Yamamura, Masahiro Sakamoto, John Ralph, Clive Lo, Toshiaki Umezawa
Multiple Authorship (Including Foreigners)
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Recruitment of specific flavonoid B‐ring hydroxylases for two independent biosynthesis pathways of flavone‐derived metabolites in grasses, New Phytologist, 2019.07
Pui Ying Lam, Andy C.W. Lui, Masaomi Yamamura, Lanxiang Wang, Yuri Takeda, Shiro Suzuki, Hongjia Liu, Fu‐Yuan Zhu, Mo‐Xian Chen, Jianhua Zhang, Toshiaki Umezawa, Yuki Tobimatsu, Clive Lo
Multiple Authorship (Including Foreigners)
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Os MYB 108 loss‐of‐function enriches p ‐coumaroylated and tricin lignin units in rice cell walls, The Plant Journal, 98(6) 975-987, 2019.06
Takuji Miyamoto, Rie Takada, Yuki Tobimatsu, Yuri Takeda, Shiro Suzuki, Masaomi Yamamura, Keishi Osakabe, Yuriko Osakabe, Masahiro Sakamoto, Toshiaki Umezawa
Multiple Authorship (Including Foreigners)
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Lignin characterization of rice CONIFERALDEHYDE 5-HYDROXYLASE loss-of-function mutants generated with the CRISPR/Cas9 system, The Plant Journal, 97(3) 543-554, 2019.02
Yuri Takeda, Shiro Suzuki, Yuki Tobimatsu, Keishi Osakabe, Yuriko Osakabe, Safendrri Komara Ragamustari, Masahiro Sakamoto, Toshiaki Umezawa
Multiple Authorship (Including Foreigners)
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Structural integrity of deposited lignin at the site of infection is crucial for resistance against Striga hermonthica in rice., Plant Physiology, 179 1796-1809, 2019.01
J. Musembi Mutuku, Songkui Cui, Chiaki Hori, Yuri Takeda, Yuki Tobimatsu, Ryo Nakabayashi, Tetsuya Mori, Kazuki Saito, Taku Demura, Toshiaki Umezawa, Satoko Yoshida, Ken Shirasu.
Multiple Authorship (Including Foreigners)
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Downregulation of p-COUMAROYL ESTER 3-HYDROXYLASE in rice leads to altered cell wall structures and improves biomass saccharification, The Plant Journal, 2018.09
Yuri Takeda, Yuki Tobimatsu, Steven D. Karlen, Taichi Koshiba, Shiro Suzuki, Masaomi Yamamura, Shinya Murakami, Mai Mukai, Takefumi Hattori, Keishi Osakabe, John Ralph, Masahiro Sakamoto, Toshiaki Ume...
Multiple Authorship (Including Foreigners)
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Host lignin composition affects haustorium induction in the parasitic plants Phtheirospermum japonicum and Striga hermonthica., New Phytologist, 218 710-723, 2018.04
Songkui Cui, Syogo Wada, Yuki Tobimatsu, Yuri Takeda, Simon B. Sauce, Toshiyuki Takano, Toshiaki Umezawa, Ken Shirasu, Satoko Yoshida
Multiple Authorship (Including Foreigners)
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Regulation of CONIFERALDEHYDE 5-HYDROXYLASE expression to modulate cell wall lignin structure in rice, Planta, 246(2) 337-349, 2017.08
Yuri Takeda, Taichi Koshiba, Yuki Tobimatsu, Shiro Suzuki, Shinya Murakami, Masaomi Yamamura, Md. Mahabubur Rahman, Toshiyuki Takano, Takefumi Hattori, Masahiro Sakamoto, Toshiaki Umezawa
Multiple Authorship (Only Japanese)
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Disrupting Flavone Synthase II alters lignin and improves biomass digestibility., Plant Physiology, 174 972-985, 2017.04
Pui Ying Lam, Yuki Tobimatsu, Yuri Takeda, Shiro Suzuki, Masaomi Yamamura, Toshiaki Umezawa, Clive Lo
Multiple Authorship (Including Foreigners)
Books
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Sustainable production and utilization of grass biomass in deteriorated grasslands in Indonesia., Routledge, 2024.01
Umezawa, T., Umemura, K., Kobayashi, M., Miyamoto, T., Takada, R., Takeda-Kimura, Y., Yamamura, M
Review Papers
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Lignin metabolic engineering in grasses for primary lignin valorization, Lignin, 1 30-41, 2022
Umezawa, T., Tobimatsu, Y., Yamamura, M., Miyamoto, T., Takeda, Y., Koshiba, T., Takada, R., Lam, PY., Suzuki, S., Sakamoto, M.
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Lignin Metabolic Engineering in Grasses for Primary Lignin Valorization, Lignin, 1 30-41, 2020.09
Umezawa Toshiaki, Tobimatsu Yuki, Yamamura Masaomi, Miyamoto Takuji, Takeda Yuri, Koshiba Taichi, Takada Rie, Lam Pui Ying, Suzuki Shiro, Sakamoto Masahiro