Updated on 2025/02/18

写真a

 
KINOUCHI Makoto
 
Title
Associate Professor
Contact information
メールアドレス
Laboratory Phone number
+81-238-26-3363
　
Laboratory Fax number
+81-238-26-3363
　

Research Areas

  • Bioinformatics

Graduating School

  • Keio University, Faculty of Science and Engineering

    1994.03, Graduated

Graduate School

  • Keio University, Graduate School, Division of Science and Engineering

    Doctor's Course, 1999.03, Completed

Degree

  • Doctor of Engineering, Keio University, 1999.03

  • Master of Engineering, Keio University, 1996.03

Academic Society Affiliations

  • IEEE

  • Japanese Society for Bioinformatics

  • The Chemical Society of Japan

 

Research Career

  • Neural Networks, 1994.04 - 1999.03

    Neural Networks

  • Detection of tRNA genes from DNA sequences, 1999.04 - 2003.03

  • Bioinformatics using Self-Organizing Maps, 1999.04 -

  • Detection of tRNA genes from DNA sequences, 2004.04 - 2006.03

Papers

  • tRNADB-CE 2011: tRNA gene database curated manually by experts, Nucleic Acids Research, 39(database) D210-D213, 2010.11

    T. Abe, T. Ikemura, J. Sugahara, A. Kanai, Y. Ohara, H. Uehara, M. Kinouchi, S. Kanaya, Y. Yamada, A. Muto, H. Inokuchi

    Multiple Authorship (Including Foreigners)

  • tRNADB-CE: tRNA gene database curated manually by experts, Nucleic Acids Research, 37(database) D163-D168, 2009.01

    T. Abe, T. Ikemura, Y. Ohara, H. Uehara, M. Kinouchi, S. Kanaya, Y. Yamada, A. Muto, H. Inokuchi

    Multiple Authorship (Including Foreigners)

  • Tissue oxygenation in a murine SCC VII tumor after X-ray irradiation as determined by EPR spectroscopy, Radiotherapy and Oncology, 86(3) 354-360, 2008.03

    H. Fujii, K Sakata, Y. Katsumata, R. Sato, M. Kinouchi, M. Someya, Shin-ichiro MASUNAGA, M. Hareyama, H.M. Swartz, H. Hirata

    Multiple Authorship (Including Foreigners)

  • tRNAfinder: A software system to find all tRNA genes in the DNA sequence based on the cloverleaf secondary structure, J. Computer Aided Chem., 7 116-126, 2006.09

    M. Kinouchi, K. Kurokawa

    Multiple Authorship (Including Foreigners)

  • Self-Organizing Map (SOM) unveils and visualizes hidden sequence characteristics of a wide range of eukaryote genomes, Gene, 365 27-34, 2006.01

    T. Abe, H. Sugawara, S. Kanaya, M. Kinouchi, T. Ikemura

    Multiple Authorship (Including Foreigners)

  • Novel phylogenetic studies of genomic sequence fragments derived from uncultured microbe mixtures in environmental and clinical samples, DNA research, 12 281-290, 2005.10

    T. Abe, H. Sugawara, M. Kinouchi, S. Kanaya, T. Ikemura

    Multiple Authorship (Including Foreigners)

  • A large-scale Self-Organizing Map (SOM) constructed with the Earth Simulator unveils sequence characteristics of a wide range of eukaryotic genomes, Workshop 2005 on Self-Organizing Maps, 187-194, 2005.09

    T. Abe, H. Sugawara, S. Kanaya, M. Kinouchi, Y. Matuura, H. Tokutaka, T. Ikemura

    Multiple Authorship (Including Foreigners)

  • ''A novel bioinformatics strategy for phylogenetic study of genomic sequence fragments: self-organizing map (SOM) of oligonucleotide frequencies, Workshop 2005 on Self-Organizing Maps, 669-676, 2005.09

    T. Abe, T. Ikemura, S. Kanaya, M. Kinouchi, H. Sugawara

    Multiple Authorship (Including Foreigners)

  • Detection of tRNA genes from DNA sequences of eukaryotes, The Fifteenth International Conference on Genome Informatics, P113-1-P113-2, 2004.12

    M. Kinouchi, Y. Kudo

    Multiple Authorship (Including Foreigners)

  • Novel bioinformatics for unveiling hidden characteristics in genome sequences and searching in silico for genetic signal sequences, The 8th World Multi-Conference on Systemics, Cybernetics and Informatics, 105-112, 2004.07

    T. Abe, S. Kanaya, M. Kinouchi, Y. Kosaka, T. Ikemura

    Multiple Authorship (Including Foreigners)

  • Gene classification based on expression profile using BL-SOM: suitability assessment of multivariate gene expression data to spherical and plain SOM by N-measure, The 8th World Multi-Conference on Systemics, Cybernetics and Informatics, 597-604, 2004.07

    H. Nishio, M. Altaf-Ul-Amin, Y. Nakamura, T. Abe, M. Kinouchi, T. Ikemura, K. Kobayashi, N. Ogasawara, S. Kanaya

    Multiple Authorship (Including Foreigners)

  • Much faster learning algorithm for Batch-Learning SOM and its application to Bioinformatics, Proc. Workshop on Self-Organizing Maps, 107-111, 2003.09

    M. Kinouchi, Y. Kudo

    Multiple Authorship (Including Foreigners)

  • Introduction of virtual peptides as absolute indices in SOM for usage in bioinformatics, Proc. Workshop on Self-Organizing Maps, 112-115, 2003.09

    M. Kinouchi, Y. Shiga, Y. Kudo

    Multiple Authorship (Including Foreigners)

  • Informatics for unveiling hidden genome signatures, Genome Research, 13 693-702, 2003.04

    T. Abe, S. Kanaya, M. Kinouchi, Y. Ichiba, T. Kozuki, T. Ikemura

    Multiple Authorship (Including Foreigners)

  • Quick learning for batch-learning self-organizing map, Genome Informatics, 13 266-267, 2002.12

    M. Kinouchi, N. Takada, Y. Kudo, T. Ikemura

    Multiple Authorship (Including Foreigners)

  • A novel bioinformatic strategy for unveiling hidden genome signatures of eukaryotes: self-organizing map of oligonucleotide frequency, Genome Informatics, 13 12-20, 2002.12

    T. Abe, S. Kanaya, M. Kinouchi, Y. Ichiba, T. Kozuki, T. Ikemura

    Multiple Authorship (Including Foreigners)

  • Periodicity in prokaryotic and eukaryotic genomes identified by power spectrum analysis, Gene, 300 203-211, 2002.10

    A. Fukushima, T. Ikemura, M. Kinouchi, T. Oshima, Y. Kudo, H. Mori, S. Kanaya

    Multiple Authorship (Including Foreigners)

  • Detection of tRNA genes with introns from DNA sequences of Archaea, Genome Informatics, 12 431-432, 2001.12

    M. Kinouchi, Y. Kudo

    Multiple Authorship (Including Foreigners)

  • Statistical analysis of genomic information: various periodicities in DNA sequence, Genome Informatics, 12 435-436, 2001.12

    A. Fukushima, M. Kinouchi, Y. Kudo, S. Kanaya, H. Mori, T. Ikemura

    Multiple Authorship (Including Foreigners)

  • Codon usage and tRNA genes in eukaryotes: Correlation of codon usage diversity with translation efficientcy and with CG-dinucleotide usage as assess by multivariate analysis, J. Mol. Evol., 53(4) 290-298, 2001.10

    S. Kanaya, Y. Yamada, M. Kinouchi, Y. Kudo, T. Ikemura

    Multiple Authorship (Including Foreigners)

  • Analysis of codon usage diversity of bacterial genes with a self-organizing map: characterization of horizontally transferred genes with emphasis on E. coli O157 genome, Gene, 276 89-99, 2001.10

    S. Kanaya, M. Kinouchi, T. Abe, Y. Kudo, Y. Yamada, T. Nishi, H. Mori, T. Ikemura

    Multiple Authorship (Including Foreigners)

  • Self-organizing mapping in codon usage diversity of bacterial genes, Proc. J. Sympo. Bio-Sensing and Bio-Imaging, 243-246, 2001.08

    M. Kinouchi, T. Abe, Y. Kudo

    Multiple Authorship (Including Foreigners)

  • Detection of endocrine-disrupting activity for environmental materials by Salmonids, Proc. J. Sympo. Bio-Sensing and Bio-Imaging, 254-257, 2001.08

    K. Katsura, S. Kanaya, M. Kinouchi, I. Ioka, Y. Kudo, T. Ogata

    Multiple Authorship (Including Foreigners)

  • Detection of tRNA based on the cloverleaf secondary structure, Genome Informatics, 11 301-302, 2000.12

    M. Kinouchi, S. Kanaya, T. Ikemura, Y. Kudo

    Multiple Authorship (Including Foreigners)

  • Statistical analysis of genomic information --Long-range correlation in DNA sequences--, Genome Informatics, 11 315-316, 2000.12

    A. Fukushima, M. Kinouchi, S. Kanaya, Y. Kudo, T. Ikemura

    Multiple Authorship (Including Foreigners)

  • Prediction of proteolytic process based on N-terminal sequences and molecular weights by proteomics　and proteome analysis, J. Computer Aided Chem., 1 82-88, 2000.09

    Y. Ujiie, K. Sasaki, M. Kinouchi, Y. Kudo, S. Kanaya

    Multiple Authorship (Including Foreigners)

  • Detection of transfer RNA based on the cloverleaf secondary structure, J. Computer Aided Chem., 1 76-81, 2000.09

    M. Kinouchi, S. Kanaya, Y. Kudo

    Multiple Authorship (Including Foreigners)

  • Proteome analysis of Oncorhynchus species during embryogenesis, Electrophoresis, 21(9) 1907-1913, 2000.05

    S. Kanaya, Y. Ujiie, K. Hasegawa, T. Sato, H. Imada, M. Kinouchi, Y. Kudo, T. Ogata, H. Ohya, H. Kamada, K. Iwamoto, K. Katsura

    Multiple Authorship (Including Foreigners)

  • Gene classification method based on batch-learning SOM, Genome Informatics, 10 314-315, 1999.12

    T. Abe, S. Kanaya, M. Kinouchi, Y. Kudo, H. Mori, H. Matsuda, C.D. Carpio, T. Ikemura

    Multiple Authorship (Including Foreigners)

  • Image segmentation by artificial life approach using autonomous agents, Proc. Int. J. Conf. Neural Networks, 4413-4418, 1999.07

    H. Kagawa, M. Kinouchi, M. Hagiwara

    Multiple Authorship (Including Foreigners)

  • Music information retrieval system using complex-valued necurrent neural networks, Proc. IEEE Int. Conf. Syst., Man, and Cybern., 4290-4295, 1998.10

    M. Kataoka, M. Kinouchi, M. Hagiwara

    Multiple Authorship (Including Foreigners)

  • Recurrent neural network using mixture of experts for time series processing, Proc. IEEE Int. Conf. Syst., Man, and Cybern., 536-541, 1997.10

    M. Tabuse, M. Kinouchi, M. Hagiwara

    Multiple Authorship (Including Foreigners)

  • Memorization of melodies by complex-valued recurrent network, Proc. IEEE Int. Conf. Neural Networks, 1324-1328, 1996.06

    M. Kinouchi, M. Hagiwara

    Multiple Authorship (Including Foreigners)

  • Learning temporal sequences using complex neurons with local feedback, Proc. IEEE Int. Conf. Neural Networks, 3165-3169, 1995.11

    M. Kinouchi, M. Hagiwara

    Multiple Authorship (Including Foreigners)

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Books

  • Complex-Valued Neural Networks: Theories and Applications, World Scientific Publishing, 2003.11

    A. Hirose ed.

Grant-in-Aid for Scientific Research

  • Grant-in-Aid for Young Scientists(B)，2004.04 - 2006.03